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The Inception Phase for the second phase of the Future Health Systems Research Program Consortium lasted from January-August 2011. This report summarizes the progress made during that time and lays out a plan of action for the next five years of work. In particular, the report summarizes progress made on research (including different analytical frameworks, themes and methodologies), management, capacity development, policy influence and research uptake and monitoring and evaluation of the program. Full annexes are available upon request.